I think that the problem with the Matrix sequels is based on how they finished the first one. Neo essentially established “God Mode” and “noclip” on himself. He could’ve ruled the Matrix yet somehow had issues with the agents…still. How long did he fight them in that little basketball court thing while agents by the hundreds poured in? He should’ve just been able to blink and obliterate the entire section of the Matrix, agents and all.
And then with the addition of the ‘real world’ problems…well…
I liked it when it was a small, ragtag group of people that have exited the Matrix; not when there’s an entire power structure of the rebels outside the Matrix. That just seemed…odd and out of place to me.